ABOUT THIS RECORDspecies: Festuca pratensis
miRNA family: MIR1122
source: miRNEST
Taxonomy by NCBI:
Festuca pratensis Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGATACATCCGTATCTACAC miRNA* CTAGATATGGATGTATGTAAA mismatches: 2 bulges: 0 |
pre-miRNA
GATACTCTCTCCGTCTAAAAATAGTCTCACTTTTGTCTAGATATGGATGTATGTAAACGCATTTTAGTTATAGATACATCCGTATCTACACAAAGTCAGA
CACATATTTTTAGATGGAGGTAGT
dot-bracket secondary structure
...(((.((((((((((((((((((((.(((((.((.(((((((((((((((.(((((........))).)).))))))))))))))).))))))).)))
)...)))))))))))))))).)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GATACTCTCTCCGTCTAAAAATAGTCTCACTTTTGTCTAGATATGGATGTATGTAAACGCATTTTAGTTATAGATACATCCGTATCTACACAAAGTCAGA
CACATATTTTTAGATGGAGGTAGT
dot-bracket secondary structure
...(((.((((((((((((((((((((.(((((.((.(((((((((((((((.(((((........))).)).))))))))))))))).))))))).)))
)...)))))))))))))))).)))
SIMILARITIES| miRBase far-MIR1122: 0.000000000007 PMRD tmo-miR1122: 0.0000000001 microPC miR1122: 0.0000004 | UniProt no hits RFAM MIR1122: 0.000000002 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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