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Species belonging to selected taxon:

Oryzias latipes



ABOUT THIS RECORD

ID: MNEST006697
species: Oryzias latipes
miRNA family: mir-203
source: miRNEST

Taxonomy by NCBI:
Oryzias latipes Oryzias Oryziinae Adrianichthyidae Adrianichthyoidei Beloniformes Atherinomorpha Smegmamorpha Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGTGGTTCTCAACAGTTCAAC

miRNA*
TGAAATGTTTAGGACCACTTG

mismatches: 4
bulges: 0

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pre-miRNA
AAATGTGTTGTCATTCTGATTAAGTGGTTCTCAACAGTTCAACAGTTCTTTGAGAAAATTGTGAAATGTTTAGGACCACTTGACCAGTCAGACAAATGCT
A


dot-bracket secondary structure
.......(((((...(((.((((((((((((.((((.((((....((((...)))).....)))).)))).)))))))))))).)))...))))).....
.



SIMILARITIES
miRBase tni-mir-203: 2e-36

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-203: 8e-39
most similar mature miRNAs

Identical with: tni-mir-203 from miRBase (MNEST034778)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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