ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: miR-3533
source: miRNEST
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGAAGTGTGATGTGGATAT miRNA* GGAAACATTGTGCTCAGTGG mismatches: 5 bulges: 0 |
pre-miRNA
TGGAAGCTGCAGGGATCCACGAGACTACTTACAACTCCATCATGAAGTGTGATGTGGATATCAGGAAGGATCTGTATGGAAACATTGTGCTCAGTGGTGG
TTCAAACATGTTCCCCGGTATTGCGGATCGTATGA
dot-bracket secondary structure
.............(((((.(((.(((....(((...(((((((..((((((((((...(((((((.....)))).)))...))))))))))..)))))))
........))).....))).))).)))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
TGGAAGCTGCAGGGATCCACGAGACTACTTACAACTCCATCATGAAGTGTGATGTGGATATCAGGAAGGATCTGTATGGAAACATTGTGCTCAGTGGTGG
TTCAAACATGTTCCCCGGTATTGCGGATCGTATGA
dot-bracket secondary structure
.............(((((.(((.(((....(((...(((((((..((((((((((...(((((((.....)))).)))...))))))))))..)))))))
........))).....))).))).)))))......
SIMILARITIES| miRBase gga-mir-3533: 5e-16 PMRD no hits microPC no hits | UniProt sp|P24902|ACT_PINCO: 2e-18 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
