miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Rattus norvegicus, Xenopus laevis, Gallus gallus, Canis lupus familiaris, Ovis aries, Macaca fascicularis, Anolis carolinensis, Trichosurus vulpecula, Papio anubis, Homo sapiens, Taeniopygia guttata, Peromyscus maniculatus bairdii, Pongo abelii, Ursus americanus, Equus caballus, Oryctolagus cuniculus, Macaca nemestrina, Rana catesbeiana, Cynops pyrrhogaster, Ambystoma tigrinum tigrinum, Cavia porcellus, Bos indicus, Meleagris gallopavo, Lonchura striata domestica, Bos sp., Macropus eugenii, Peromyscus polionotus subgriseus, Capra hircus, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST006729
species: Gallus gallus
miRNA family: miR-3533
source: miRNEST

Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATGAAGTGTGATGTGGATAT

miRNA*
 GGAAACATTGTGCTCAGTGG

mismatches: 5
bulges: 0
View larger
pre-miRNA
 TGGAAGCTGCAGGGATCCACGAGACTACTTACAACTCCATCATGAAGTGTGATGTGGATATCAGGAAGGATCTGTATGGAAACATTGTGCTCAGTGGTGG
TTCAAACATGTTCCCCGGTATTGCGGATCGTATGA

dot-bracket secondary structure
.............(((((.(((.(((....(((...(((((((..((((((((((...(((((((.....)))).)))...))))))))))..)))))))
........))).....))).))).)))))......


SIMILARITIES
miRBase gga-mir-3533: 5e-16

PMRD no hits

microPC no hits		UniProt sp|P24902|ACT_PINCO: 2e-18

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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