ABOUT THIS RECORDspecies: Festuca pratensis
miRNA family: MIRf1666
source: miRNEST
Taxonomy by NCBI:
Festuca pratensis Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AATATATATACTCCCTCCGTT miRNA* TGGAGAGAGTATTATATTAC mismatches: 2 bulges: 1 |
pre-miRNA
GCTATAGGGTCTTCCTAATGCAATATATATACTCCCTCCGTTGCATTAAAACTCGTGTGAGATTTGTCTAAATTTAGATATATCTAGACACTAAATATTA
TTAAGATGCATTCGAATTTTGACAAACTTCCGACATGTTTCACAGAATGGAGAGAGTATTATATTACTACTATTTGTAATTCAGA
dot-bracket secondary structure
((..(((((...)))))..)).(((((.((((((.(((((((...........((((((((.((((((.((((((.(((.(((((.((............
)).))))).))).)))))).)))))).)))..)))))........))))))).)))))))))))...(((.....))).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GCTATAGGGTCTTCCTAATGCAATATATATACTCCCTCCGTTGCATTAAAACTCGTGTGAGATTTGTCTAAATTTAGATATATCTAGACACTAAATATTA
TTAAGATGCATTCGAATTTTGACAAACTTCCGACATGTTTCACAGAATGGAGAGAGTATTATATTACTACTATTTGTAATTCAGA
dot-bracket secondary structure
((..(((((...)))))..)).(((((.((((((.(((((((...........((((((((.((((((.((((((.(((.(((((.((............
)).))))).))).)))))).)))))).)))..)))))........))))))).)))))))))))...(((.....))).......
SIMILARITIES| miRBase no hits PMRD asa-miR1122: 0.0006 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
