miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST000680
species: Festuca pratensis
miRNA family: MIR160
source: miRNEST

Taxonomy by NCBI:
Festuca pratensis Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCTGGCTCCCTGTATGCCA

miRNA*
 GCGTGCGAGGAGCCAAGCATG

mismatches: 2
bulges: 0
View larger
pre-miRNA
 AACTTGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAACTCGGTTCACCTCCCACCACCGTAGCGTTGGCTCTACCGCGGATGGCGTGCG
AGGAGCCAAGCATGACCATCTC

dot-bracket secondary structure
....(((..(((((.(((((((.(((((((((.((((((((..((((((.((((............))))....)))))).))).))))).)))))))))
.))))))).))))).)))....


SIMILARITIES
miRBase tae-MIR160: 2e-27

PMRD tae-miR160: 2e-27

microPC miR160: 1e-19		UniProt no hits

RFAM mir-160: 0.000000000000008		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;