miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST000683
species: Festuca pratensis
miRNA family: MIR408
source: miRNEST

Taxonomy by NCBI:
Festuca pratensis Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCACTGCCTCTTCCCTGGCT

miRNA*
 ACAGGGATGGAGCAGAGCAAG

mismatches: 4
bulges: 0
View larger
pre-miRNA
 GAGGGGAGAGGAGACAGGGATGGAGCAGAGCAAGGGATGGGGCAAACAACAAACTTACTTTCTTGCTTCCACTACGTGTATGTGGATGTGACGAGTACAA
GGAGCAAACTGCGTGCAAGAGAGTTGTGAGAGATGAGAGCTGATGGTGTTGTTGCTCCCTCCCCTGCACTGCCTCTTCCCTGGCTCCCCTGCATC

dot-bracket secondary structure
.(((((((......((((((.((.((((.(((.((((.(((((((.(((((...((((((((...(((.(((.((.(((((((((.(((...........
...)))..))))))))).....)).))).)))..))))).)))...)))))))))))).)))).))).)))).)).)))))).))))))).....


SIMILARITIES
miRBase osa-MIR408: 5e-20

PMRD osa-miR408: 5e-20

microPC miR408: 0.0002		UniProt no hits

RFAM MIR408: 9e-19		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;