ABOUT THIS RECORDspecies: Salmo salar
miRNA family: let-7
source: miRNEST
Taxonomy by NCBI:
Salmo salar Salmo Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTATACAATCTACTGTCTTTC miRNA* GAGGTAGTAGATTGAATAGTT mismatches: 1 bulges: 0 |
pre-miRNA
CGCTGGGGGAGGTAGTAGATTGAATAGTTGTGGGGTATATGTCCTCCCTCTGAGATAACTATACAATCTACTGTCTTTCCTAAGGAGA
dot-bracket secondary structure
...(((((((((((((((((((.((((((((((((..........)))).....)))))))).)))))))))))))))))))......
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
additional data
download this record
CGCTGGGGGAGGTAGTAGATTGAATAGTTGTGGGGTATATGTCCTCCCTCTGAGATAACTATACAATCTACTGTCTTTCCTAAGGAGA
dot-bracket secondary structure
...(((((((((((((((((((.((((((((((((..........)))).....)))))))).)))))))))))))))))))......
SIMILARITIES| miRBase tgu-let-7e: 8e-26 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 1e-28 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
additional data
download this record
