ABOUT THIS RECORDspecies: Salmo salar
miRNA family: mir-21
source: miRNEST
Taxonomy by NCBI:
Salmo salar Salmo Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCTTATCAGACTGGTGTTG miRNA* ACAACAGTCTGTAAGCTGTC mismatches: 1 bulges: 1 |
pre-miRNA
TCCCTCTCCCATCCTGTCAGATAGCTTATCAGACTGGTGTTGACTGTTTGAATCACATGGCGACAACAGTCTGTAAGCTGTCTGAAGTTCTGGGTATTAA
dot-bracket secondary structure
.......((((.....((((((((((((.(((((((.(((((.((((.((...)).))))))))).))))))))))))))))))).....))))......
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCCCTCTCCCATCCTGTCAGATAGCTTATCAGACTGGTGTTGACTGTTTGAATCACATGGCGACAACAGTCTGTAAGCTGTCTGAAGTTCTGGGTATTAA
dot-bracket secondary structure
.......((((.....((((((((((((.(((((((.(((((.((((.((...)).))))))))).))))))))))))))))))).....))))......
SIMILARITIES| miRBase gga-mir-21: 9e-17 PMRD no hits microPC no hits | UniProt no hits RFAM mir-21: 1e-16 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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