miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Ancylostoma caninum, Ascaris suum, Heterorhabditis bacteriophora, Brachionus plicatilis, Pristionchus pacificus, Caenorhabditis japonica, Caenorhabditis brenneri, Strongyloides ratti, Brugia malayi, Trichinella spiralis, Meloidogyne hapla, Heterodera glycines, Meloidogyne incognita, Caenorhabditis remanei, Trichinella pseudospiralis, Onchocerca volvulus, Nippostrongylus brasiliensis, Meloidogyne chitwoodi, Globodera rostochiensis, Strongyloides stercoralis, Ancylostoma ceylanicum



ABOUT THIS RECORD

ID: MNEST006905
species: Caenorhabditis elegans
miRNA family: mir-354
source: miRNEST

Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ACCTTGTTTGTTGCTGCTCCT

miRNA*
 GTGCGGCTGCAGACGGGTAT

mismatches: 3
bulges: 1
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pre-miRNA
 TCTAAGCACCTTGGTGCGGCTGCAGACGGGTATCCGGCTCGACGTTCATACATCACGACTTCTTTCCTTTTACCTTGTTTGTTGCTGCTCCTATTGGTTTT


dot-bracket secondary structure
)......(((..((.(((((.(((((((((((...((...((.(((..........))).))...))...)))).))))))).))))).))....)))...



SIMILARITIES
miRBase cel-mir-354: 5.0E-52

PMRD no hits

microPC no hits		UniProt no hits

RFAM 4mir-354: 7.0E-27		most similar mature miRNAs

Identical with: cel-mir-354 from miRBase (MNEST038379)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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