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Species belonging to selected taxon:
Caenorhabditis elegans
,
Ancylostoma caninum
,
Ascaris suum
,
Heterorhabditis bacteriophora
,
Pristionchus pacificus
,
Caenorhabditis japonica
,
Caenorhabditis brenneri
,
Strongyloides ratti
,
Brugia malayi
,
Meloidogyne hapla
,
Heterodera glycines
,
Meloidogyne incognita
,
Caenorhabditis remanei
,
Onchocerca volvulus
,
Nippostrongylus brasiliensis
,
Meloidogyne chitwoodi
,
Globodera rostochiensis
,
Strongyloides stercoralis
,
Ancylostoma ceylanicum
ABOUT THIS RECORD
ID:
MNEST006906
species:
Caenorhabditis elegans
miRNA family:
miR-4121
source:
miRNEST
Taxonomy by NCBI:
Caenorhabditis elegans
Caenorhabditis
Peloderinae
Rhabditidae
Rhabditoidea
Rhabditida
Chromadorea
Nematoda
Pseudocoelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GAGTTGGAGTTGGGTTTGGTG
miRNA*
TTGAACCTGAGTATTTTTCTTCA
mismatches:
4
bulges:
2
View larger
pre-miRNA
GAATATGATTGATGGTTCATTGGAGAGATTG
GAGTTGGAGTTGGGTTTGGTG
AGATTTCCTCTTTTGGACGGACTTCTTCTTGACGAGCTTTTTGGTCGA
GAACTCCGTGATAGGAAACATTTGA
TTGAACCTGAGTATTTTTCTTCA
GTCTTTCCATCTCTGGATCATCAGCAAT
dot-bracket secondary structure
.....((.(((((((((((.(((((((((((
(((..(((.(((((((((((.
(((((((((.((....(((((....((((((((..........)))))
))).))))))).)))))..)))).)
))))))))))...)))..)))))
)))))))))....)))))))))))))..
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
sp|P34416|LASP1_CAEEL: 8e-16
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record