miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Ancylostoma caninum, Ascaris suum, Heterorhabditis bacteriophora, Pristionchus pacificus, Caenorhabditis japonica, Caenorhabditis brenneri, Strongyloides ratti, Brugia malayi, Trichinella spiralis, Meloidogyne hapla, Heterodera glycines, Meloidogyne incognita, Caenorhabditis remanei, Trichinella pseudospiralis, Onchocerca volvulus, Nippostrongylus brasiliensis, Meloidogyne chitwoodi, Globodera rostochiensis, Strongyloides stercoralis, Ancylostoma ceylanicum



ABOUT THIS RECORD

ID: MNEST006906
species: Caenorhabditis elegans
miRNA family: miR-4121
source: miRNEST

Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GAGTTGGAGTTGGGTTTGGTG

miRNA*
 TTGAACCTGAGTATTTTTCTTCA

mismatches: 4
bulges: 2
View larger
pre-miRNA
 GAATATGATTGATGGTTCATTGGAGAGATTGGAGTTGGAGTTGGGTTTGGTGAGATTTCCTCTTTTGGACGGACTTCTTCTTGACGAGCTTTTTGGTCGA
GAACTCCGTGATAGGAAACATTTGATTGAACCTGAGTATTTTTCTTCAGTCTTTCCATCTCTGGATCATCAGCAAT

dot-bracket secondary structure
.....((.(((((((((((.((((((((((((((..(((.(((((((((((.(((((((((.((....(((((....((((((((..........)))))
))).))))))).)))))..)))).)))))))))))...)))..))))))))))))))....)))))))))))))..


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|P34416|LASP1_CAEEL: 8e-16

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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