miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Ancylostoma caninum, Heterorhabditis bacteriophora, Caenorhabditis japonica, Caenorhabditis brenneri, Strongyloides ratti, Caenorhabditis remanei, Nippostrongylus brasiliensis, Strongyloides stercoralis, Ancylostoma ceylanicum



ABOUT THIS RECORD

ID: MNEST006906
species: Caenorhabditis elegans
miRNA family: miR-4121
source: miRNEST

Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GAGTTGGAGTTGGGTTTGGTG

miRNA*
 TTGAACCTGAGTATTTTTCTTCA

mismatches: 4
bulges: 2
View larger
pre-miRNA
 GAATATGATTGATGGTTCATTGGAGAGATTGGAGTTGGAGTTGGGTTTGGTGAGATTTCCTCTTTTGGACGGACTTCTTCTTGACGAGCTTTTTGGTCGA
GAACTCCGTGATAGGAAACATTTGATTGAACCTGAGTATTTTTCTTCAGTCTTTCCATCTCTGGATCATCAGCAAT

dot-bracket secondary structure
.....((.(((((((((((.((((((((((((((..(((.(((((((((((.(((((((((.((....(((((....((((((((..........)))))
))).))))))).)))))..)))).)))))))))))...)))..))))))))))))))....)))))))))))))..


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|P34416|LASP1_CAEEL: 8e-16

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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