ABOUT THIS RECORDspecies: Fragaria vesca
miRNA family: MIR159
source: miRNEST
Taxonomy by NCBI:
Fragaria vesca Fragaria Potentilleae Rosodae Rosoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCTA miRNA* GAGCTCCTTGAAGTCCAATAG mismatches: 3 bulges: 0 |
pre-miRNA
GTTTTAGCTAGGGTTATGGAGTGGAGCTCCTTGAAGTCCAATAGAAGATGTTGCTAGGTTGATTGAGCTGCTGAGCTATGAATTCCACACTTCTATCTCT
GTTTTTTGATAAAGATGATAGGCTTGTGGCTTGCATACCTCAGGAGCTGCATTACCTGAGTTGCATCATGTTTTGGATTGAAGGGAGCTCTACACCTTGG
CTTATCTGTCTC
dot-bracket secondary structure
.....(((((((((......((((((((((((..(((((((.....(((((.(((((((....((((((.(((((.((((....(((((..(((((((((
............))).))))))..)))))....)))).))))).)))).))..)))).))).))))).....)))))))..)))))))))))))))))))
))..........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTTTTAGCTAGGGTTATGGAGTGGAGCTCCTTGAAGTCCAATAGAAGATGTTGCTAGGTTGATTGAGCTGCTGAGCTATGAATTCCACACTTCTATCTCT
GTTTTTTGATAAAGATGATAGGCTTGTGGCTTGCATACCTCAGGAGCTGCATTACCTGAGTTGCATCATGTTTTGGATTGAAGGGAGCTCTACACCTTGG
CTTATCTGTCTC
dot-bracket secondary structure
.....(((((((((......((((((((((((..(((((((.....(((((.(((((((....((((((.(((((.((((....(((((..(((((((((
............))).))))))..)))))....)))).))))).)))).))..)))).))).))))).....)))))))..)))))))))))))))))))
))..........
SIMILARITIES| miRBase ptc-MIR159b: 1e-20 PMRD ptc-miR159b: 1e-20 microPC miR159: 5e-94 | UniProt no hits RFAM MIR159: 6e-17 | most similar mature miRNAs |
Identical with: miR159 from microPC (MNEST044801) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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