ABOUT THIS RECORDspecies: Fragaria vesca
miRNA family: MIR157
source: miRNEST
Taxonomy by NCBI:
Fragaria vesca Fragaria Potentilleae Rosodae Rosoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGAGCAC miRNA* GCTCTCTATGCTTCTGTCATCA mismatches: 1 bulges: 1 |
pre-miRNA
GATGTTGTTGACAGAAGATAGAGAGCACAGATGGATGACTTGCAATGAATATGCATCTCACTCCTTTGTGCTCTCTATGCTTCTGTCATCACCTA
dot-bracket secondary structure
.....((.(((((((((((((((((((((((.((((((..((((.......))))..))).))))))))))))))))).))))))))).))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GATGTTGTTGACAGAAGATAGAGAGCACAGATGGATGACTTGCAATGAATATGCATCTCACTCCTTTGTGCTCTCTATGCTTCTGTCATCACCTA
dot-bracket secondary structure
.....((.(((((((((((((((((((((((.((((((..((((.......))))..))).))))))))))))))))).))))))))).))....
SIMILARITIES| miRBase ptc-MIR156j: 2e-26 PMRD ptc-miR156j: 2e-26 microPC miR157: 1e-40 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR157 from microPC (MNEST046830) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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