ABOUT THIS RECORDspecies: Fragaria vesca
miRNA family: MIRf637
source: miRNEST
Taxonomy by NCBI:
Fragaria vesca Fragaria Potentilleae Rosodae Rosoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGTTTGCCGGAGCTGGAGGAT miRNA* CCCCATCTCCGTCAAGCAGC mismatches: 4 bulges: 1 |
pre-miRNA
GCCTGCGCCGGAGTTTGCCGGAGCTGGAGGATTTTGACCAAGGAGATCGTTAAGTCTCCTGAGCTCTCCGGGAAGCTCACCTTCCCCATCTCCGTCAAGC
AGCCTGGTCCA
dot-bracket secondary structure
...((.(((((.(((((.(((((.(((.(((.........(((((((......)))))))(((((((...)).)))))....)))))).))))).)))))
...))))).))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GCCTGCGCCGGAGTTTGCCGGAGCTGGAGGATTTTGACCAAGGAGATCGTTAAGTCTCCTGAGCTCTCCGGGAAGCTCACCTTCCCCATCTCCGTCAAGC
AGCCTGGTCCA
dot-bracket secondary structure
...((.(((((.(((((.(((((.(((.(((.........(((((((......)))))))(((((((...)).)))))....)))))).))))).)))))
...))))).))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q10LG8|TLP6_ORYSJ: 0.000000000005 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
