ABOUT THIS RECORDspecies: Ictalurus punctatus
miRNA family: mir-598
source: miRNEST
Taxonomy by NCBI:
Ictalurus punctatus Ictalurus Ictaluridae Siluriformes Siluriphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCGTCATCGTCGTCATCGTC miRNA* AGGTGGTGATGAAAGACCAAGTG mismatches: 3 bulges: 2 |
pre-miRNA
TGCAAAGAAGGTGGTGATGAAAGACCAAGTGGAGGAGAGGAATCCCATGTTCACCCATCCCTCGTCATCGTCGTCATCGTCAACAT
dot-bracket secondary structure
......((.(((((((((((..(((..((.(((((....((((.....))))..)).))))).))).))))))))))).)).....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TGCAAAGAAGGTGGTGATGAAAGACCAAGTGGAGGAGAGGAATCCCATGTTCACCCATCCCTCGTCATCGTCGTCATCGTCAACAT
dot-bracket secondary structure
......((.(((((((((((..(((..((.(((((....((((.....))))..)).))))).))).))))))))))).)).....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
