miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Danio rerio, Ictalurus punctatus, Pimephales promelas, Ictalurus furcatus, Cyprinus carpio, Misgurnus anguillicaudatus, Rutilus rutilus



ABOUT THIS RECORD

ID: MNEST007018
species: Ictalurus punctatus
miRNA family: mir-1322
source: miRNEST

Taxonomy by NCBI:
Ictalurus punctatus Ictalurus Ictaluridae Siluriformes Siluriphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GATGCTGCTGCTGCTGCTGCT

miRNA*
 CTGTAGCCGTAGTGCATCAC

mismatches: 2
bulges: 1
View larger
pre-miRNA
 GCCATCGGCGAGCTGTAGCCGTAGTGCATCACCTGCTCGTACGTTTTCAGGTCCATTTTGTGGTGATGCTGCTGCTCGGACGACATAAGGTTGTTGATGG
AGAACGGGTGGTTGAAAGCGTAGTGGTGATCTGGCTTCAAGTGCGCGTCGTGCGCAAGAACCGCGTGGTGCTGCGCCATTAGATGCTGCTGCTGCTGCTG
CTGTTGGTGGT

dot-bracket secondary structure
(((((((((.(((.(((((.((((((((((..((((((((...((((((.((((.....(((((......)))))..))))((((......))))..)))
))))))))))).(((..((((((((.((...(((.(((...(((((.....))))).))))))..)).))))))))..)))))))).))))).))))).)
)))))))))))


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|Q07342|FOXA2_DANRE: 2e-20

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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