ABOUT THIS RECORDspecies: Glycine soja
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Glycine soja Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGG miRNA* GGCAAGTTGGCCTTGGCTATA mismatches: 2 bulges: 0 |
pre-miRNA
ACCTAAGAAGAACTTGCACGAAGAGGCAGAGAGTGTAGTGCAGCCAAGGATGACTTGCCGGCATTAGCCAAGTGAATGAGCATCATATATATATATATAT
ATATATATGACTCATGTTCTTGTCGGCAAGTTGGCCTTGGCTATATTGGACTCTCTTCTTTTCATGTAAGTGCCACAATTAG
dot-bracket secondary structure
..((((.....(((((((.(((((((.(((((((.(((((.((((((((.(((((((((((((..(((.......(((((..((((((((((((....))
))))))))))))))))))..))))))))))))).)))))))).))))).)))))))))))))).))))))).......))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACCTAAGAAGAACTTGCACGAAGAGGCAGAGAGTGTAGTGCAGCCAAGGATGACTTGCCGGCATTAGCCAAGTGAATGAGCATCATATATATATATATAT
ATATATATGACTCATGTTCTTGTCGGCAAGTTGGCCTTGGCTATATTGGACTCTCTTCTTTTCATGTAAGTGCCACAATTAG
dot-bracket secondary structure
..((((.....(((((((.(((((((.(((((((.(((((.((((((((.(((((((((((((..(((.......(((((..((((((((((((....))
))))))))))))))))))..))))))))))))).)))))))).))))).)))))))))))))).))))))).......))))
SIMILARITIES| miRBase mtr-MIR169b: 0.00000000004 PMRD gso-miR169a: 3e-18 microPC miR169: 3e-18 | UniProt no hits RFAM MIR169_2: 0.00000000005 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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