miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Oncorhynchus mykiss, Oncorhynchus tshawytscha, Oncorhynchus nerka



ABOUT THIS RECORD

ID: MNEST007203
species: Oncorhynchus mykiss
miRNA family: miR-199b
source: miRNEST

Taxonomy by NCBI:
Oncorhynchus mykiss Oncorhynchus Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTGTATTCTGCACATTTGGTT

miRNA*
 AAAGGTGCAGAATGCCGGT

mismatches: 2
bulges: 2
View larger
pre-miRNA
 CACACAAGGTAATGTATTCTTATGTCTACACCTGTATTCTGCACATTTGGTTGAGAAATTTGGCTTTTTGGGAGCCTGCAGAAAGGTGCAGAATGCCGGT
TTAGTTAGAGAGAGAGAGCAGGCTACAC

dot-bracket secondary structure
.......(((..(((.(((((.((.(((.(((.(((((((((((.(((..(((........(((((.....)))))..))).)))))))))))))).)))
.))).))....))))).))).)))....


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




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