ABOUT THIS RECORDspecies: Oncorhynchus mykiss
miRNA family: miR-4200
source: miRNEST
Taxonomy by NCBI:
Oncorhynchus mykiss Oncorhynchus Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCTGCCCCTACTTTTATTT miRNA* ATAAAGGTGATGCTGTGGTG mismatches: 5 bulges: 1 |
pre-miRNA
GGATCCAGTTGTAAAAGGCAAAATAAAGGTGATGCTGTGGTGACTATTCAGGATCTTATATTCAGGATGTCTCTGTTAGTAGGATTGTCTTAACTACGTG
TTTAAGAACGAAACAATTGCCTCTGCCCCTACTTTTATTTCGGTCTTTTAATTTGTTTT
dot-bracket secondary structure
.....(((...((((((((.(((((((((((..((...(((((...(((..((((((((...((((.....))))...)))))))).((((((.......
.))))))..)))....)))))...))...)))))))))))..))))))))..)))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GGATCCAGTTGTAAAAGGCAAAATAAAGGTGATGCTGTGGTGACTATTCAGGATCTTATATTCAGGATGTCTCTGTTAGTAGGATTGTCTTAACTACGTG
TTTAAGAACGAAACAATTGCCTCTGCCCCTACTTTTATTTCGGTCTTTTAATTTGTTTT
dot-bracket secondary structure
.....(((...((((((((.(((((((((((..((...(((((...(((..((((((((...((((.....))))...)))))))).((((((.......
.))))))..)))....)))))...))...)))))))))))..))))))))..)))....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
