miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Oncorhynchus mykiss, Oncorhynchus tshawytscha, Oncorhynchus nerka



ABOUT THIS RECORD

ID: MNEST007209
species: Oncorhynchus mykiss
miRNA family: miR-4200
source: miRNEST

Taxonomy by NCBI:
Oncorhynchus mykiss Oncorhynchus Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCTCTGCCCCTACTTTTATTT

miRNA*
 ATAAAGGTGATGCTGTGGTG

mismatches: 5
bulges: 1
View larger
pre-miRNA
 GGATCCAGTTGTAAAAGGCAAAATAAAGGTGATGCTGTGGTGACTATTCAGGATCTTATATTCAGGATGTCTCTGTTAGTAGGATTGTCTTAACTACGTG
TTTAAGAACGAAACAATTGCCTCTGCCCCTACTTTTATTTCGGTCTTTTAATTTGTTTT

dot-bracket secondary structure
.....(((...((((((((.(((((((((((..((...(((((...(((..((((((((...((((.....))))...)))))))).((((((.......
.))))))..)))....)))))...))...)))))))))))..))))))))..)))....


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




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