ABOUT THIS RECORDspecies: Glycyrrhiza uralensis
miRNA family: MIR1171
source: miRNEST
Taxonomy by NCBI:
Glycyrrhiza uralensis Glycyrrhiza Galegeae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTAGTGGAGTGGAGTGGAGT miRNA* TCCCTAAACTCCCCTACGGC mismatches: 3 bulges: 1 |
pre-miRNA
GGACTTCATTAACTCCCTAAACTCCCCTACGGCACCGATCCCCTCAACCGCCACGTGGTGGAAGACGATAGATAAGTACATATGGCTGAAGTGGTATCCC
GTTTTCCGTGTTCTCTGAGATTGAGATAAGTAACTGTAGTGGAGTGGAGTGGAGTGGTGTAGTCA
dot-bracket secondary structure
.((((.(((((.((((((..(((((.((((((.((..(((...((((((((...)))))((((((((...((((....(((.........))).)))).)
)))))))....(((...))).))))))..))..)))))).)))))..)).))))))))).)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGACTTCATTAACTCCCTAAACTCCCCTACGGCACCGATCCCCTCAACCGCCACGTGGTGGAAGACGATAGATAAGTACATATGGCTGAAGTGGTATCCC
GTTTTCCGTGTTCTCTGAGATTGAGATAAGTAACTGTAGTGGAGTGGAGTGGAGTGGTGTAGTCA
dot-bracket secondary structure
.((((.(((((.((((((..(((((.((((((.((..(((...((((((((...)))))((((((((...((((....(((.........))).)))).)
)))))))....(((...))).))))))..))..)))))).)))))..)).))))))))).)))).
SIMILARITIES| miRBase cre-MIR1171: 0.0005 PMRD cre-miR1171: 0.0005 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
