ABOUT THIS RECORDspecies: Gasterosteus aculeatus
miRNA family: mir-467
source: miRNEST
Taxonomy by NCBI:
Gasterosteus aculeatus Gasterosteus Gasterosteidae Gasterosteiformes Gasterosteiformes/Syngnathiformes group Smegmamorpha Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATGTATGTATATGTGTGTGT miRNA* CACTCAAATGCAAACATCAC mismatches: 4 bulges: 1 |
pre-miRNA
CAGGAGGGTTGTATGTATGTATATGTGTGTGTGTGTGTGTATGTCTGTCTGTCTGTCTGCCTAAGGAGCACTGGAGCAGATTGTGCTCTATGGCTGTGCT
CTTTACTTCCCGGCCACCACAGCTGCAGCGATCATCACAACATCTGCCACTCAAATGCAAACATCACGTTGACCA
dot-bracket secondary structure
......(((((.((((.(((((.((.(((.(((((((((.(((..((.((((((((..((((((((((((((((((((.....))))))).....)))))
)))))......)))....))))..))))))..)))))).))))..))))).)).))))).)))).....))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CAGGAGGGTTGTATGTATGTATATGTGTGTGTGTGTGTGTATGTCTGTCTGTCTGTCTGCCTAAGGAGCACTGGAGCAGATTGTGCTCTATGGCTGTGCT
CTTTACTTCCCGGCCACCACAGCTGCAGCGATCATCACAACATCTGCCACTCAAATGCAAACATCACGTTGACCA
dot-bracket secondary structure
......(((((.((((.(((((.((.(((.(((((((((.(((..((.((((((((..((((((((((((((((((((.....))))))).....)))))
)))))......)))....))))..))))))..)))))).))))..))))).)).))))).)))).....))))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
