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Species belonging to selected taxon:

Oryzias latipes, Gasterosteus aculeatus, Fundulus heteroclitus, Poecilia reticulata



ABOUT THIS RECORD

ID: MNEST007254
species: Gasterosteus aculeatus
miRNA family: miR-3533
source: miRNEST

Taxonomy by NCBI:
Gasterosteus aculeatus Gasterosteus Gasterosteidae Gasterosteiformes Gasterosteiformes/Syngnathiformes group Smegmamorpha Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATGAAGTGTGATGTTGACATC

miRNA*
AGTCATGTGGCATTCATGA

mismatches: 2
bulges: 2

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pre-miRNA
TCTTGGGTATGGAGTCATGTGGCATTCATGAGACGGTCTACAACTCCATCATGAAGTGTGATGTTGACATCAGAAAAGAC

dot-bracket secondary structure
((((.....(((.(((((((.((((((((((...(((.....)))...))))))).))).))).)))).)))...)))).


SIMILARITIES
miRBase gga-mir-3533: 0.00000002

PMRD no hits

microPC no hits
UniProt sp|O16808|ACT_MAYDE: 0.00000001

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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