ABOUT THIS RECORDspecies: Solanum tuberosum
miRNA family: MIR865
source: miRNEST
Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTTCCTCAAATTCATCCTT miRNA* GGTTTTGAATATGATGAGAAAAT mismatches: 4 bulges: 2 |
pre-miRNA
GGGTTTCTCTTTTTTTCCTCAAATTCATCCTTTTTCAGAGAAAAAAACATTGCCTTTTTCATCCATTTGAAGCATATATTGTTCTCAGCTTAAAGAAGCT
TTCACAATCATGGTCTTCTGGATTTTCGGCTATGGCTCCTTGGTATGGAATCCAGGTTTTGAATATGATGAGAAAATGATTGGTT
dot-bracket secondary structure
.......((.(((((((.(((.(((((.(((.(((((..........(((.(((......(((((...((((..((((((((....(((((....)))))
...))))).)))..)))))))))....))).)))...........)))))...)))...))))).))).))))))).))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GGGTTTCTCTTTTTTTCCTCAAATTCATCCTTTTTCAGAGAAAAAAACATTGCCTTTTTCATCCATTTGAAGCATATATTGTTCTCAGCTTAAAGAAGCT
TTCACAATCATGGTCTTCTGGATTTTCGGCTATGGCTCCTTGGTATGGAATCCAGGTTTTGAATATGATGAGAAAATGATTGGTT
dot-bracket secondary structure
.......((.(((((((.(((.(((((.(((.(((((..........(((.(((......(((((...((((..((((((((....(((((....)))))
...))))).)))..)))))))))....))).)))...........)))))...)))...))))).))).))))))).))......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
