ABOUT THIS RECORDspecies: Solanum tuberosum
miRNA family: MIRf408
source: miRNEST
Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGATGCCATGTCATCATCCAC miRNA* GGATGATGATATGGTGTCTTT mismatches: 3 bulges: 0 |
pre-miRNA
TTACTTGAGCACGATGCCATGTCATCATCCACATCATCGCTACGATTGCCATATTCCTCAAAATTATCATCATCATCAATTTTAGGATGATGATATGGTG
TCTTTGGCTCGGT
dot-bracket secondary structure
....((((((..((((((((((((((((((......................................................))))))))))))))))
))....)))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTACTTGAGCACGATGCCATGTCATCATCCACATCATCGCTACGATTGCCATATTCCTCAAAATTATCATCATCATCAATTTTAGGATGATGATATGGTG
TCTTTGGCTCGGT
dot-bracket secondary structure
....((((((..((((((((((((((((((......................................................))))))))))))))))
))....)))))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM mir-598: 0.0004 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
