ABOUT THIS RECORDspecies: Gadus morhua
miRNA family: miR-133a
source: miRNEST
Taxonomy by NCBI:
Gadus morhua Gadus Gadidae Gadiformes Paracanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTGGTAAAATGGAACCAAAT miRNA* TTGGTCCCCTTCAACCAGCTG mismatches: 4 bulges: 0 |
pre-miRNA
GATCCACAATGCTTTGCTAAAGCTGGTAAAATGGAACCAAATCACCTCTTGAATGGATTTGGTCCCCTTCAACCAGCTGTAAGCTATGCTTTGATGA
dot-bracket secondary structure
......(((.((...(((..(((((((..((.((.((((((((............)))))))).)).))..)))))))...)))...)).)))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GATCCACAATGCTTTGCTAAAGCTGGTAAAATGGAACCAAATCACCTCTTGAATGGATTTGGTCCCCTTCAACCAGCTGTAAGCTATGCTTTGATGA
dot-bracket secondary structure
......(((.((...(((..(((((((..((.((.((((((((............)))))))).)).))..)))))))...)))...)).)))....
SIMILARITIES| miRBase dre-mir-133a-1: 1e-40 PMRD no hits microPC no hits | UniProt no hits RFAM mir-133: 1e-25 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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