miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea

ABOUT THIS RECORD

ID: MNEST000744
species: Gossypium hirsutum
miRNA family: MIRf137
source: miRNEST

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
ATTTGATGATGCTGCATCAGG

miRNA*
TTGTGCAGATGTCGAGTAA

mismatches: 2
bulges: 2

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pre-miRNA
ATTTTTCGGACTGTGAATCACTTAATCTTGTATTTGATGATGCTGCATCAGGCACTTTTGTGGATGAAGAAAAGAAACTTGGTAACATTGGCACAGAGAG
AAATAACCTTGTGCAGATGTCGAGTAATATGAATGATGTCTCACAGTTACCCCTA

dot-bracket secondary structure
........((((((((..((.(((.((...(((((((((...((((((.(((...(((((((((((.....(((...))).....))))..)))))))..
......))).)))))).)))))))))....)).)))))..)))))))).......

SIMILARITIES

miRBase no hits

PMRD no hits

microPC no hits

UniProt no hits

RFAM no hits

most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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