ABOUT THIS RECORDspecies: Schistosoma mansoni
miRNA family: miR-4000i
source: miRNEST
Taxonomy by NCBI:
Schistosoma mansoni Schistosoma Schistosomatidae Schistosomatoidea Strigeidida Digenea Trematoda Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATGTTATTTCAAGTTTTACC miRNA* TAAAACGTGAGAGAAAAGTTAA mismatches: 5 bulges: 1 |
pre-miRNA
AGCATGAGTATGATGTTATTTCAAGTTTTACCTTAACAGATCGCCAGATAATAAAACGTGAGAGAAAAGTTAATGAGTGGA
dot-bracket secondary structure
..(((..((.((((.((.(((((.((((((.........(((....)))..)))))).))))).))..))))))..)))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AGCATGAGTATGATGTTATTTCAAGTTTTACCTTAACAGATCGCCAGATAATAAAACGTGAGAGAAAAGTTAATGAGTGGA
dot-bracket secondary structure
..(((..((.((((.((.(((((.((((((.........(((....)))..)))))).))))).))..))))))..)))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
