miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST007522
species: Vigna unguiculata
miRNA family: MIR168
source: miRNEST

Taxonomy by NCBI:
Vigna unguiculata Vigna Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGCTTGGTGCAGGTCGGGAA

miRNA*
 CCCGCCTTGCATCAACTGAAT

mismatches: 3
bulges: 0
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pre-miRNA
 GAAGTGGATGTGATTAAGCAGCAGATTTTGATTCTATCACTGTGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCGGTTTCTGCGCGAAATGGTGAA
GTGGTAGCCGGCGGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGGCCGCAGTGAGGGTTTTTGTCGATGTCTGGTTACACCCGCTCAGATC

dot-bracket secondary structure
..(((((.((((((((.(((...(((...((..((.((((..((((((((((.(((((.((((((((((.(((((.((((((..(((.((...((((...
......)))).))))))))))).))))).)))))))))).))))).)))))))))))))).))..)).)))..))).)))))))).)))))......


SIMILARITIES
miRBase gma-MIR168: 6e-44

PMRD gma-miR168: 6e-44

microPC miR168: 2e-44		UniProt no hits

RFAM MIR168: 1e-17		most similar mature miRNAs

Identical with: miR168 from microPC (MNEST046189)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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