miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii



ABOUT THIS RECORD

ID: MNEST000753
species: Gossypium hirsutum
miRNA family: MIR2673
source: miRNEST

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CATCTTCCTCTTCCTCTTCTT

miRNA*
 GAATGGAAGGACTAGATT

mismatches: 5
bulges: 1
View larger
pre-miRNA
 TTCGATAATCTCATCTTCCTCTTCCTCTTCTTCTATATTAATTTTCACTCCTGCATCCGCAAGCTCCTCGTCGCTTTCCTCCACCACATAACTCTTCGAT
TTGGAGTCGGTGGCGGTGTCAGCCGAGGATGGGATCTTAGCTCCGAGACTTTGGAGATAGTCGCGGAAGAAGGAGAGGGAAGGATCATCAAGAATGGAAG
GACTAGATT

dot-bracket secondary structure
...((.....)).(((...((((((..(((((....(((..(((((.(((((...(((((....((((((..(((..((.(((((.....(((((.....
..))))).))))).))....)))))))))...((.((...((((((....))))))..)))))))))...))))).))))).)))....))))).)))))
)...)))..


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|Q93YR3|F10AL_ARATH: 0.00003

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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