miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Theobroma cacao



ABOUT THIS RECORD

ID: MNEST000754
species: Gossypium hirsutum
miRNA family: MIR2673
source: miRNEST

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCTCTTCCTCTTCCTCTCCAC

miRNA*
 GGGGGGGGGAGAAGAAAGAGAG

mismatches: 2
bulges: 2
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pre-miRNA
 CATCCTCCTCTTCCTCTTCCTCTCCACCAACAACACCGCTACTTCCGCTACCGACGATAAATCCTCGAGATCTACGCCGACTCGTTCACAGGACAATCGA
TCCGATTCCGCTCCACCTACAACAGCTGCAACAACGGCAACAGCAACGACGAATAGTCCGATGACCGCTTCAAATCGGTCTGGATACGATACCGCGGAAA
AGAAGTCGGTGAATCGATGTTCTGGTTGCAGAAAACGCGTTGGGTTGACCGGGTTCCGGTGTCGATGCGGGGAGCTTTTCAAAAAAATATTTTTTTAGGG
GGGGGGGGGAGAAGAAAGAGAGGAT

dot-bracket secondary structure
.((((((.(((((.(((((((((((.((.........(((...(((((...(((.((....)).)))..(((.(((((((((((.(((..(((..((((.
..)))))))..((((..........(((((((..(((.((((.((.((((......((((..(((((........))))).((........)).))))..
....)))).))......)))))))))))))).........)))).))).)))))..)))))).)))))))).))).....((((((....)))))).)).
.))))))))))).).))))))))))


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|Q9LHJ8|SAP5_ARATH: 0.00000003

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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