ABOUT THIS RECORDspecies: Macaca fascicularis
miRNA family: mir-621
source: miRNEST
Taxonomy by NCBI:
Macaca fascicularis Macaca Cercopithecinae Cercopithecidae Cercopithecoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCTGGCAACAGCTCTTACCA miRNA* GTATAGTTGTAAGTTGGAAGC mismatches: 4 bulges: 2 |
pre-miRNA
CATGAAACAACAAGCTTTTACCAACGTGCTATTCTGGCAACAGCTCTTACCAGTGCTCTTGAGGTGTACCCAAAGATTACACATCTTTCATTCAAAGAGA
GGATTTCTTGTCCAAGCTTTGTTATAGGACACTAGTAATTCCTGGAGGTATAGTTGTAAGTTGGAAGCAGGTAGGAAGTGGAATGGGTTTATTAGA
dot-bracket secondary structure
....((((..((..((.((.((.((.((((..((((((.((((((..((((.(((.((((..((.....)).)))).)))...(((((.....))))).(
(((.(((((((((.............)))))..)).)).))))...)))).))))))..)))))))))).)).)).)).))..)).))))......
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CATGAAACAACAAGCTTTTACCAACGTGCTATTCTGGCAACAGCTCTTACCAGTGCTCTTGAGGTGTACCCAAAGATTACACATCTTTCATTCAAAGAGA
GGATTTCTTGTCCAAGCTTTGTTATAGGACACTAGTAATTCCTGGAGGTATAGTTGTAAGTTGGAAGCAGGTAGGAAGTGGAATGGGTTTATTAGA
dot-bracket secondary structure
....((((..((..((.((.((.((.((((..((((((.((((((..((((.(((.((((..((.....)).)))).)))...(((((.....))))).(
(((.(((((((((.............)))))..)).)).))))...)))).))))))..)))))))))).)).)).)).))..)).))))......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q9Z142|TMM33_RAT: 0.00002 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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