ABOUT THIS RECORDspecies: Macaca fascicularis
miRNA family: mir-1273
source: miRNEST
Taxonomy by NCBI:
Macaca fascicularis Macaca Cercopithecinae Cercopithecidae Cercopithecoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGGTGACAGAGCGAGACTCCG miRNA* GGGTTTCACCATGTTAGCCAG mismatches: 5 bulges: 0 |
pre-miRNA
ACTGGCCAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCTTGACCTCGTGATCCGCCTGCCTCAGCTTCCC
AAAGTGCTGAGATTACAGGTGTGAGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAGGAA
dot-bracket secondary structure
)....((..((((((...(((((....(((((((((((((....(((((.(((((.(((..((((....))))....(((.((((((((.((((((.....
.....))))))....)))))).)).......))).))).))))).)))))....))))))))))))).....)))))...))))))..))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACTGGCCAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCTTGACCTCGTGATCCGCCTGCCTCAGCTTCCC
AAAGTGCTGAGATTACAGGTGTGAGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAGGAA
dot-bracket secondary structure
)....((..((((((...(((((....(((((((((((((....(((((.(((((.(((..((((....))))....(((.((((((((.((((((.....
.....))))))....)))))).)).......))).))).))))).)))))....))))))))))))).....)))))...))))))..))..
SIMILARITIES| miRBase ppy-mir-1273: 1.0E-11 PMRD ptc-miRf10804-akr: 3.0E-9 microPC no hits | UniProt sp|Q05481|ZNF91_HUMAN: 4.0E-9 RFAM PMetazoa_SRP: 5.0E-45 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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