miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Litopenaeus vannamei, Petrolisthes cinctipes, Penaeus monodon, Homarus americanus, Eriocheir sinensis, Carcinus maenas, Callinectes sapidus, Fenneropenaeus chinensis



ABOUT THIS RECORD

ID: MNEST007607
species: Litopenaeus vannamei
miRNA family: miR-3123
source: miRNEST

Taxonomy by NCBI:
Litopenaeus vannamei Litopenaeus Penaeidae Penaeoidea Dendrobranchiata Decapoda Eucarida Eumalacostraca Malacostraca Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAGAGAATTGTTTAATGGTTT

miRNA*
 TTCATTATACTTTTGTCTAGT

mismatches: 5
bulges: 0
View larger
pre-miRNA
 CTTTTAACATATAGAGAATTGTTTAATGGTTTCGGAAGCACTTGGGAATATTCATAACTACGCCTTCAAACAAGTAAACGGAACTCCTCCATTTGGGGTT
GTATGTGAATACTTGGGCTTCCTCTGCCCCTGTTGATATAATGTACGAATCCCACAATCAAAGAATTCATTATACTTTTGTCTAGTTC

dot-bracket secondary structure
...........((((.((..((.((((((.(((.((...(((((.(((................)))...))))).((.(((.....))).))(((((((
((((((....((..((((.......))))..)).......)))))).)))))))...))...))).)))))).))..)).))))....


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




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