ABOUT THIS RECORDspecies: Litopenaeus vannamei
miRNA family: mir-1322
source: miRNEST
Taxonomy by NCBI:
Litopenaeus vannamei Litopenaeus Penaeidae Penaeoidea Dendrobranchiata Decapoda Eucarida Eumalacostraca Malacostraca Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGTGATGCTGCTGGTGCTGAT miRNA* CATCGCCGCAGGGTCCGCTTG mismatches: 3 bulges: 2 |
pre-miRNA
CCTCTCCTTTTTCATCGCCGCAGGGTCCGCTTGCTGGTGATGCTGCTGGTGCTGATGGGGGTGCT
dot-bracket secondary structure
...(((((...(((.((((((((.(((.(((....)))))).)))).)))).))).)))))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCTCTCCTTTTTCATCGCCGCAGGGTCCGCTTGCTGGTGATGCTGCTGGTGCTGATGGGGGTGCT
dot-bracket secondary structure
...(((((...(((.((((((((.(((.(((....)))))).)))).)))).))).)))))....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM mir-598: 0.0008 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
