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Species belonging to selected taxon:
Litopenaeus vannamei
,
Penaeus monodon
,
Fenneropenaeus chinensis
ABOUT THIS RECORD
ID:
MNEST007609
species:
Litopenaeus vannamei
miRNA family:
miR-1603
source:
miRNEST
Taxonomy by NCBI:
Litopenaeus vannamei
Litopenaeus
Penaeidae
Penaeoidea
Dendrobranchiata
Decapoda
Eucarida
Eumalacostraca
Malacostraca
Crustacea
Pancrustacea
Mandibulata
Arthropoda
Panarthropoda
Protostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GTGTTTTGTTTTGTGTTTGTT
miRNA*
TAAGCTTAAAGCAAGAACTGC
mismatches:
5
bulges:
0
View larger
pre-miRNA
TGTGTGTGTGGTGTATCTGTGTGTGCATGTGTATGAGTGT
GTGTTTTGTTTTGTGTTTGTT
TTTGTGTGTGCGTGTGTGTGTGTATAATGAAACTGCATG
AGAATATTTGATATATGTATATTAATGT
TAAGCTTAAAGCAAGAACTGC
CTCTGTAAATGTGGGCACTCCAGTCTTATATATTGAA
dot-bracket secondary structure
..........(((((.(((.((((.(((((.((((((.((
(..((((((((((.(((((..
((...((((((((((((((((.....(((......))).
...))))...)))))))))))).))...
))))).))))))))))..)))
))).))).))))).))))..)))...)))))......
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record