ABOUT THIS RECORDspecies: Anolis carolinensis
miRNA family: miR-2187
source: miRNEST
Taxonomy by NCBI:
Anolis carolinensis Anolis Polychrotinae Iguanidae Iguania Squamata Lepidosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTCAGGCTATCCTAATCTAC miRNA* AGAGTAGGTGGATGAAAAT mismatches: 4 bulges: 2 |
pre-miRNA
TTCCTCCTCATTTTCAGGCTATCCTAATCTACCAGTTTCTCAGATTTACCTGCTTAAGTTTGTTCTGTGTTTCAAGAATGTTCTTTTCCACCTGGTCAGC
ACTTCTTTGCATCCGGGAAATGAGCACGGCCAAGTCATTGCTTCCCGAGGACCTAAAAGCAAGAAAACAGAGAGTAGGTGGATGAAAATAAAAATAA
dot-bracket secondary structure
.........(((((((..(((.((((.(((.....((((...(((((.(((((((.((..((((((........))))))..))(((((....((...((
(......)))..)).))))).))))).))..))))).((((((((...)))......)))))))))....))).))))))).)))))))........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TTCCTCCTCATTTTCAGGCTATCCTAATCTACCAGTTTCTCAGATTTACCTGCTTAAGTTTGTTCTGTGTTTCAAGAATGTTCTTTTCCACCTGGTCAGC
ACTTCTTTGCATCCGGGAAATGAGCACGGCCAAGTCATTGCTTCCCGAGGACCTAAAAGCAAGAAAACAGAGAGTAGGTGGATGAAAATAAAAATAA
dot-bracket secondary structure
.........(((((((..(((.((((.(((.....((((...(((((.(((((((.((..((((((........))))))..))(((((....((...((
(......)))..)).))))).))))).))..))))).((((((((...)))......)))))))))....))).))))))).)))))))........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q9D952|EVPL_MOUSE: 0.0001 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
