miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST000077
species: Oryza sativa
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAAGACTTTCTAGCATTGCCC

miRNA*
 GTAATGCTATAACGTCTTACA

mismatches: 2
bulges: 0
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pre-miRNA
 TAAACAGCGCTACTCCCTCCGTTTCATAATATAAGACTTTCTAGCATTGCCCATATGTATATATATGTCTAGATTCATTAACATCTATATGAATATATGA
ATGTGGGTAATGCTATAACGTCTTACATTATAAAACGGAGGAAGTAACTATTAAA

dot-bracket secondary structure
..........((((.(((((((((.(((((.((((((.((.(((((((((((((((.(((((((.(((.(((((........))))).))).))))))).
))))))))))))))).)).)))))).))))).))))))))).)))).........


SIMILARITIES
miRBase osa-MIR819a: 6e-16

PMRD osa-miR819a: 6e-16

microPC miR1130: 0.0000000000001		UniProt no hits

RFAM MIR1122: 7e-25		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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