miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Theobroma cacao



ABOUT THIS RECORD

ID: MNEST000770
species: Gossypium hirsutum
miRNA family: MIR166
source: miRNEST

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCC

miRNA*
 AATGTTGTCTGGACCGGGG

mismatches: 3
bulges: 0
View larger
pre-miRNA
 TCATTCTGAGGGGAATGTTGTCTGGACCGGGGACACTTGTGTTTCTAATCCGTTTTCCCTGCAATATTGTTCTGATTAACGTGGGGATCTTTATATTGCT
TATTTTTGTAATGGATTAAGGTTGTACTAGTGTCGTCGGACCAGGCTTCATTCCCCCCAATCAT

dot-bracket secondary structure
......((.((((((((..((((((.((((.((((((.(((.((.(((((((((......(((((((......((((........))))...))))))).
.........))))))))).))...))).)))))).)))).))))))..)))))))).)).....


SIMILARITIES
miRBase ghr-MIR166b: 5e-84

PMRD ghr-miR166b: 5e-84

microPC miR166: 1e-78		UniProt no hits

RFAM mir-166: 0.00000000004		most similar mature miRNAs

Identical with: ghr-MIR166b from miRBase (MNEST041048)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;