miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Theobroma cacao



ABOUT THIS RECORD

ID: MNEST000772
species: Gossypium hirsutum
miRNA family: MIRf91
source: miRNEST

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCATCGTCTTCTCCTTCTCCT

miRNA*
 GAGGAGGAGGATGGTATGG

mismatches: 2
bulges: 2
View larger
pre-miRNA
 TTTTTTGTTCTTCATCGTCTTCTCCTTCTCCTTCTCGCCGCTGATCCCGCTGACTTAACGCATGACGTGACGAATCGTTGACCGCCGGCGTTTTCGTCGC
ACGAGGCCGCCTATTCTTCTTCGTGGCAGTTCGCTTCATATCTGGGGATCGTGAAACCCTAATTCGAAAAAAAGGAGGTGGAGGAGGAGGAGGATGGTAT
GGAACAAGGA

dot-bracket secondary structure
.((((((((((..(((((((..((((((((((((..(((..((.((..((.........))..)).((((((((.(((((.....)))))..))))))))
.)).))).((((.((.((.((((.((...(((((.((.........))..)))))..)).....)))).)).)).)))))))))))))))))))))))..
))))))))))


SIMILARITIES
miRBase no hits

PMRD ath-miRf10706-akr: 0.0007

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




Liczniki na strone;