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Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii



ABOUT THIS RECORD

ID: MNEST000775
species: Gossypium hirsutum
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGAGCCGCGCCAATATCACT

miRNA*
 CGATGTTGGTGAGGTTCAATC

mismatches: 2
bulges: 0
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pre-miRNA
 CAAGAAAAGAAAGCGATGTTGGTGAGGTTCAATCCGAAGACGGATTTACGAATTGATTCAGTCGTAAAATACGATCTCAGATTGAGCCGCGCCAATATCAC
TTTCCACATC

dot-bracket secondary structure
).......(((((.((((((((((.(((((((((.((.((((..(((((((..........)))))))...)).)))).))))))))).)))))))))).)
))))......


SIMILARITIES
miRBase tcc-MIR171c: 1.0E-46

PMRD ghr-miR171: 5.0E-43

microPC miR171: 1.0E-46		UniProt no hits

RFAM 1MIR171_1: 3.0E-29		most similar mature miRNAs

Identical with: miR171 from microPC (MNEST046236), ghr-miR171 from PMRD , miR171 from microPC

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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