ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: miR162
source: miRNEST
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGGCAGCGGTTCATCGAT miRNA* CGATAAACCTCTGCATCCAGC mismatches: 3 bulges: 0 |
pre-miRNA
CGGTAAAGACACTGGAGGCAGCGGTTCATCGATCTCTTCCTGAGAATTTTGTTGTGAGAATAACACAAATACATGAATCGATCGATAAACCTCTGCATCCA
GCGCCTTAAC
dot-bracket secondary structure
).((.(((...(((((.((((.((((.(((((((..(((.((...((((((((((....)))))).)))).)).)))..))))))).)))).)))).))))
)...))).))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CGGTAAAGACACTGGAGGCAGCGGTTCATCGATCTCTTCCTGAGAATTTTGTTGTGAGAATAACACAAATACATGAATCGATCGATAAACCTCTGCATCCA
GCGCCTTAAC
dot-bracket secondary structure
).((.(((...(((((.((((.((((.(((((((..(((.((...((((((((((....)))))).)))).)).)))..))))))).)))).)))).))))
)...))).))
SIMILARITIES| miRBase ghr-MIR162a: 6.0E-58 PMRD ghr-miR162a: 6.0E-58 microPC miR162: 1.0E-46 | UniProt no hits RFAM 2MIR162_2: 7.0E-21 | most similar mature miRNAs |
Identical with: miR162 from microPC (MNEST045545), ghr-MIR162a from miRBase , miR162 from microPC , ghr-miR162a from PMRD |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
