miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Lepeophtheirus salmonis, Caligus rogercresseyi, Lernaeocera branchialis, Caligus clemensi, Calanus finmarchicus



ABOUT THIS RECORD

ID: MNEST007781
species: Lepeophtheirus salmonis
miRNA family: miR-4172
source: miRNEST

Taxonomy by NCBI:
Lepeophtheirus salmonis Lepeophtheirus Caligidae Siphonostomatoida Podoplea Neocopepoda Copepoda Maxillopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TATTATGTCATATATTTAATA

miRNA*
 TTATGTAATGATCATAGGTAG

mismatches: 3
bulges: 2
View larger
pre-miRNA
 TAATTATCTCTTCTTTTTTTTTACATTTATAGTGCTATTTTTATTATGTCATATATTTAATATTATGTTTGTGATGGTCATGAAAAAATTTTCCAAGTTG
CTATTTATCACCTTTTTGATATTATGTAATGATCATAGGTAGATACAAAAAAAACAATAAATTGAAAAAAAGCCCCC

dot-bracket secondary structure
............(((((((((...((((((.((..(((((...(((((((((.(((.((((((((.....(((((((.((.((((....)))).....))
....))))))).....)))))))).))))))).)))))..)))))........)).)))))).))))))))).....


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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