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Species belonging to selected taxon:

Lepeophtheirus salmonis, Caligus rogercresseyi, Lernaeocera branchialis, Caligus clemensi



ABOUT THIS RECORD

ID: MNEST007789
species: Lepeophtheirus salmonis
miRNA family: miR-3299
source: miRNEST

Taxonomy by NCBI:
Lepeophtheirus salmonis Lepeophtheirus Caligidae Siphonostomatoida Podoplea Neocopepoda Copepoda Maxillopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ACATTGTTAAAATCTGTAGTG

miRNA*
ATAAATGATTATAAAAATGTTG

mismatches: 5
bulges: 1

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pre-miRNA
ATGTAATTTTGTGTAAAATGCAATAAATGATTATAAAAATGTTGTTTTAAAATAACTGAGAAACACACTAACCAATAGGCAGTTTATTAAAATTATACAT
TGTTAAAATCTGTAGTG
TGGTACAAATGATGAAAAG


dot-bracket secondary structure
.....(((...((((...((((.((...((((.(((.(((((.(((((((...(((((.....................)))))..)))))))...))))
).))).))))..)).))
)).))))...)))......



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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