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Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Theobroma cacao



ABOUT THIS RECORD

ID: MNEST000779
species: Gossypium hirsutum
miRNA family: MIRf491
source: miRNEST

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCTGTTGGAGCATCATCAAG

miRNA*
 TGATGATGCTGCAGTGGCAAT

mismatches: 2
bulges: 0
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pre-miRNA
 AGATTGCACAACAGTCACTGTTTGCTGTTGGAGCATCATCAAGATTCACAATTTTAGGGTTCTTTTTTGATTGATTTGATCAATCAGCCTTTTTATGATTG
AGAATCCTGATGATGCTGCAGTGGCAATAAGTGGCTAAATATTCCA

dot-bracket secondary structure
)...........(((((((..(((((((((.((((((((((.(((((.(((((..(((((.......((((((((...))))))))))))).....)))))
.))))).)))))))))).)))))))))..)))))))..........


SIMILARITIES
miRBase ghr-MIR172: 1.0E-66

PMRD ath-miRf11051-akr: 1.0E-10

microPC miR172: 0.0001		UniProt no hits

RFAM 2mir-172: 9.0E-9		most similar mature miRNAs

Identical with: ghr-MIR172 from miRBase (MNEST041050)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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