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Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Theobroma cacao



ABOUT THIS RECORD

ID: MNEST000783
species: Gossypium hirsutum
miRNA family: MIR396
source: miRNEST

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTCCACAGCTTTCTTGAACTG

miRNA*
 GTTCAATAAAGCTGTGGGAAG

mismatches: 1
bulges: 0
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pre-miRNA
 AACATGGCTCTCTTCGTATTCTTCCACAGCTTTCTTGAACTGCAATTTCATGTAATCAGATCATTCATTCATTCGTTGTCGTTGATGGTGCTGCATATAT
ACGAGTACGTTGTTGCGGTTCAATAAAGCTGTGGGAAGATACAAACAGGGTCAAAG

dot-bracket secondary structure
....(((((((.((.(((((.((((((((((((.((((((((((((...(((((.((...............(((((......)))))............
..)).))))).)))))))))))).)))))))))))).))))).)).)))))))...


SIMILARITIES
miRBase ghr-MIR396a: 3e-73

PMRD ghr-miR396b: 1e-60

microPC miR396: 1e-60		UniProt no hits

RFAM MIR396: 0.0000000000002		most similar mature miRNAs

Identical with: miR396 from microPC (MNEST045555)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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