ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIRf968
source: miRNEST
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGTTAAGCTCAGGAGGGATA miRNA* TCCATCCTGAGTTTCATCGGT mismatches: 3 bulges: 0 |
pre-miRNA
CTCCAGTATGGAAGAATCTGTTAAGCTCAGGAGGGATAGCGCCATGGATGATCCATCTTTCAAGCTTTCATGCATGTATGTTATTTGATCCTCATATAGCG
CTATCCATCCTGAGTTTCATCGGTTCTTCTTGCTTGC
dot-bracket secondary structure
)...((((.(((((((((.((.((((((((((.(((((((((.(((((.((((.......((.((......)).))..........)))).)).))).)))
)))))).)))))))))).)).)))))))))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTCCAGTATGGAAGAATCTGTTAAGCTCAGGAGGGATAGCGCCATGGATGATCCATCTTTCAAGCTTTCATGCATGTATGTTATTTGATCCTCATATAGCG
CTATCCATCCTGAGTTTCATCGGTTCTTCTTGCTTGC
dot-bracket secondary structure
)...((((.(((((((((.((.((((((((((.(((((((((.(((((.((((.......((.((......)).))..........)))).)).))).)))
)))))).)))))))))).)).)))))))))))))...
SIMILARITIES| miRBase ghr-MIR390b: 6.0E-71 PMRD ghr-miR390b: 6.0E-71 microPC miR390: 5.0E-50 | UniProt no hits RFAM 0MIR390: 2.0E-15 | most similar mature miRNAs |
Identical with: miR390 from microPC (MNEST045362), ghr-miR390c from PMRD , ghr-MIR390a from miRBase , ghr-MIR390c from miRBase , ghr-MIR390b from miRBase , ghr-miR390a from PMRD , ghr-miR390b from PMRD , miR390 from microPC |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
