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Species belonging to selected taxon:

Gossypium hirsutum



ABOUT THIS RECORD

ID: MNEST000792
species: Gossypium hirsutum
miRNA family: MIRf267
source: miRNEST

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GATCGATGAACCGCTGCCTCA

miRNA*
 ATGCAGAGGTTTATCGATCGA

mismatches: 3
bulges: 0
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pre-miRNA
 GTTAAGGCGCTGGATGCAGAGGTTTATCGATCGATTCATGTATTTGTGTTATTCTCACAACAAAATTCTCAGGAAGAGATCGATGAACCGCTGCCTCAAT
AATAACGC

dot-bracket secondary structure
((((........((.((((.((((((((((((..(((.((.((((.(((.......)))...))))...)).)))..)))))))))))).)))).))...
..))))..


SIMILARITIES
miRBase ghr-MIR162a: 4e-50

PMRD ghr-miR162a: 4e-50

microPC miR162: 8e-45		UniProt no hits

RFAM MIR162_2: 7e-18		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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